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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193894951_193898353_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193894951 - 193898353
Intron Length:
3403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTTCTTTTATT
Flanking Amino Acid:
NGDKRLSATEPSDEDTISFN
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.8
0.72
0.7
81.3
30.3
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
LRCH1
Ensembl Gene ID:
ENSAPLG00000014780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020199
193851611 - 193967070
115460
ENSAPLT00000018395
193851611 - 193967070
115460
ENSAPLT00000043844
193849492 - 193967070
117579
ENSAPLT00000015482
193849492 - 193967070
117579
ENSAPLT00000039134
193851611 - 193967070
115460
ENSAPLT00000032824
193851611 - 193967070
115460