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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193911782_193966790_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193911782 - 193966790
Intron Length:
55009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTCTCTTTATA
Flanking Amino Acid:
SHDLSDTVRADLSKNRLTEV
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.5
0.78
0.7
79.9
25.6
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
58.5
0.26
1.6
67.89
38.5

Associated Gene:

Gene:
LRCH1
Ensembl Gene ID:
ENSAPLG00000014780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032824
193851611 - 193967070
115460
ENSAPLT00000020199
193851611 - 193967070
115460
ENSAPLT00000018395
193851611 - 193967070
115460
ENSAPLT00000043844
193849492 - 193967070
117579
ENSAPLT00000015482
193849492 - 193967070
117579
ENSAPLT00000039134
193851611 - 193967070
115460