Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194015175_194015802_F

Intron Information:

Intron Rank:

140723

Intron Class:

major

Intron Phase:

Intron Coordinates:

194015175 - 194015802

Intron Length:

628

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTGAT

5'SS Class:

major

3'SS Sequence:

TATCTCAATGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTATCTCAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

74.1

36.5

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

69.3

0.43

0.9

64.1

36.5

Minor 5ss

33.1

-1.9

3.5

45.5

Minor BPS

61.1

0.21

1.6

68.04

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025759

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027000

194015129 - 194016955

1827