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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194028841_194031060_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194028841 - 194031060
Intron Length:
2220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTGTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTCTTCTAACC
Flanking Amino Acid:
YSGVFRHSGKLNHKNLKVAF
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.7
0.51
0.9
65.3
41.1
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
56.7
0.19
1.7
69.01
36

Associated Gene:

Gene:
RUBCNL
Ensembl Gene ID:
ENSAPLG00000015418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038214
194027954 - 194048815
20862
ENSAPLT00000020620
194026330 - 194048815
22486
ENSAPLT00000016074
194028586 - 194048815
20230