About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194031170_194033086_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194031170 - 194033086
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTCTCCTAACC
Flanking Amino Acid:
APTPQISVLSDEYSRPAVIG
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
72.3
0.5
1
69
40.8
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
62
0.35
1.7
73.44
36.7

Associated Gene:

Gene:
RUBCNL
Ensembl Gene ID:
ENSAPLG00000015418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038214
194027954 - 194048815
20862
ENSAPLT00000020620
194026330 - 194048815
22486
ENSAPLT00000016074
194028586 - 194048815
20230