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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194042785_194043169_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194042785 - 194043169
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTAACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTGCTTAACT
Flanking Amino Acid:
LENLSVTPDERSSFEPGSNS
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.5
0.53
1
62.7
43.1
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
77.9
0.95
1.7
91.67
38.1

Associated Gene:

Gene:
RUBCNL
Ensembl Gene ID:
ENSAPLG00000015418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020620
194026330 - 194048815
22486
ENSAPLT00000016074
194028586 - 194048815
20230
ENSAPLT00000038214
194027954 - 194048815
20862