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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194043303_194043683_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194043303 - 194043683
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
CTTTTCCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTTTCCCAACA
Flanking Amino Acid:
SGCLSSSKQRSVLKEEIPRE
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
62.5
43.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.6
0.64
0.8
74.2
29.5
Minor 5ss
33.7
-1.9
3
37.8
40.8
Minor BPS
55.5
0.17
1.9
71.95
40.1

Associated Gene:

Gene:
RUBCNL
Ensembl Gene ID:
ENSAPLG00000015418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038214
194027954 - 194048815
20862
ENSAPLT00000020620
194026330 - 194048815
22486
ENSAPLT00000016074
194028586 - 194048815
20230