About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194043830_194044348_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194043830 - 194044348
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TGAAACGTAACA
Flanking Amino Acid:
QIIFNIHPSVKRDAVIAAQN
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
82.3
0.73
0.8
76.6
32
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
48
-0.1
2.2
63.26
42.2

Associated Gene:

Gene:
RUBCNL
Ensembl Gene ID:
ENSAPLG00000015418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038214
194027954 - 194048815
20862
ENSAPLT00000020620
194026330 - 194048815
22486
ENSAPLT00000016074
194028586 - 194048815
20230