Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194060488_194061082_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194060488 - 194061082

Intron Length:

595

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTAAG

5'SS Class:

strong_major

3'SS Sequence:

CTTAAAATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TGGTCCTTAAAA

Flanking Amino Acid:

RVIPNDIKNLRKLECLNTEG

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

79.7

35.4

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

71.4

0.48

63.3

41.5

Minor 5ss

41.2

-1

2.5

50.1

46.4

Minor BPS

75.3

0.79

1.4

77.78

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020396

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048283

194058313 - 194077672

19360