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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194061167_194061938_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194061167 - 194061938
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
SFNLLSDLPSGLFLLENLQN
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
75.6
36.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.2
0.79
0.7
81
29.5
Minor 5ss
38
-1.4
3.4
47.1
48.3
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048283
194058313 - 194077672
19360