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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194069107_194069706_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194069107 - 194069706
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATATCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATCA
Flanking Amino Acid:
EPGREEGPFTDSNGAPDGNS
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
36
Major BPS
100
1.24
0.5
100
0
Major PPT
74.8
0.56
0.8
69.8
35
Minor 5ss
32.4
-2
3.1
40.9
45.1
Minor BPS
62.4
0.39
1.9
79.95
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048283
194058313 - 194077672
19360