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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194069842_194072798_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194069842 - 194072798
Intron Length:
2957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
TTGTGTGCAATG
Flanking Amino Acid:
TRKPEQQKILEITSHEKIRK
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
82.5
0.73
0.7
81.3
30.8
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
40.8
-0.8
2.4
50.51
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048283
194058313 - 194077672
19360