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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194073639_194077200_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194073639 - 194077200
Intron Length:
3562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCGTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTCGTTAACA
Flanking Amino Acid:
LSTPREKVGKGKVSGRYLSR
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.2
0.54
1
69.5
40.5
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
71.4
0.67
2
83.14
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048283
194058313 - 194077672
19360