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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194096281_194105393_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
194096281 - 194105393
Intron Length:
9113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAG
U12 Branch Point Sequence:
CCGCACGAAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
29.6
Major BPS
47.7
-0.1
1.5
43.5
39.2
Major PPT
89.6
0.89
0.6
84.7
22.9
Minor 5ss
39.2
-1.2
3
51.6
45.1
Minor BPS
35.9
-0.9
2.2
46.94
44.9

Associated Gene:

Gene:
LCP1
Ensembl Gene ID:
ENSAPLG00000000904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032004
194095348 - 194123855
28508