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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194105477_194107389_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194105477 - 194107389
Intron Length:
1913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
AELREAFSKVDVSGNGFIHA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.7
0.8
0.8
80.9
36.3
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
LCP1
Ensembl Gene ID:
ENSAPLG00000000904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032004
194095348 - 194123855
28508
ENSAPLT00000001266
194105394 - 194123855
18462