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Intron Name: Anas_platyrhynchos_platyrhynchos_1_194108544_194109676_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194108544 - 194109676

Intron Length:

1133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTACA

5'SS Class:

strong_major

3'SS Sequence:

GGTGTGTCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

ATGGATTTGATG

Flanking Amino Acid:

SSAGTQHSYSEEEKYAFVNW

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

80.7

33.8

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

65.4

0.35

57.1

43.4

Minor 5ss

34.6

-1.7

2.9

Minor BPS

46.5

-0.4

1.6

48.6

39.8

Associated Gene:

Gene:

LCP1

Ensembl Gene ID:

ENSAPLG00000000904

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032004

194095348 - 194123855

28508

ENSAPLT00000001266

194105394 - 194123855

18462