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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194116959_194117301_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
194116959 - 194117301
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTTT
5'SS Class:
weak_major
3'SS Sequence:
CTGTCTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
KQPDFYNIIKDSRAYYHLLN
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.8
37.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.6
0.53
0.9
67.7
37.8
Minor 5ss
68.3
0.62
2.4
81.8
38.5
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
LCP1
Ensembl Gene ID:
ENSAPLG00000000904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001266
194105394 - 194123855
18462