Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194119573_194119773_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194119573 - 194119773

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTGTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATGAT

U12 Branch Point Sequence:

TGGTCAATGATC

Flanking Amino Acid:

GVNPRVNHLYSDLSDALVIF

Intron Amino Acid Position:

424

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.1

38.2

Major BPS

64.5

0.36

1.1

55.4

40.3

Major PPT

86.6

0.82

0.8

84.6

Minor 5ss

28.6

-2.5

3.5

46.8

Minor BPS

47.8

-0.1

1.9

60.63

38.7

Associated Gene:

Gene:

LCP1

Ensembl Gene ID:

ENSAPLG00000000904

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032004

194095348 - 194123855

28508

ENSAPLT00000001266

194105394 - 194123855

18462