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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194158404_194158845_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194158404 - 194158845
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TGAGTGTGAAAT
Flanking Amino Acid:
LGPSTGSTAETQCRNWLKTG
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
71.8
0.49
0.9
69.4
36.9
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
42.4
-0.5
2.2
59.38
43.4

Associated Gene:

Gene:
ZC3H13
Ensembl Gene ID:
ENSAPLG00000002707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002754
194158287 - 194199253
40967
ENSAPLT00000033983
194157632 - 194199253
41622