About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194158404_194164320_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194158404 - 194164320
Intron Length:
5917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TGTTTCTGTATT
Flanking Amino Acid:
GLDPALEVLQRSPERPTGDL
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
74.8
0.56
1
68.9
40.9
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
56.3
0.28
1.8
77.06
39.7

Associated Gene:

Gene:
ZC3H13
Ensembl Gene ID:
ENSAPLG00000002707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018663
194152057 - 194199253
47197