Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194164433_194171074_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194164433 - 194171074

Intron Length:

6642

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

TTTACTCTAATG

Flanking Amino Acid:

STEESSSPVRKESSRGRHRE

Intron Amino Acid Position:

114

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

75.5

40.6

Major BPS

82.2

0.8

0.9

81.6

Major PPT

86.1

0.81

0.6

81.2

Minor 5ss

36.6

-1.5

41.4

44.7

Minor BPS

59.4

0.16

1.8

68.73

Associated Gene:

Gene:

ZC3H13

Ensembl Gene ID:

ENSAPLG00000002707

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033983

194157632 - 194199253

41622

ENSAPLT00000018663

194152057 - 194199253

47197

ENSAPLT00000002754

194158287 - 194199253

40967