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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194174848_194176157_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194174848 - 194176157
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTCCG
5'SS Class:
major
3'SS Sequence:
GGTTTATATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CAGTCCTTCATT
Flanking Amino Acid:
AVSSPLLDQQRSSKSNQSKK
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.3
66.3
45.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
68.2
0.41
1
59.8
45.4
Minor 5ss
30
-2.3
2.6
34
41.3
Minor BPS
60.7
0.42
1.8
72.56
44.8

Associated Gene:

Gene:
ZC3H13
Ensembl Gene ID:
ENSAPLG00000002707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033983
194157632 - 194199253
41622
ENSAPLT00000018663
194152057 - 194199253
47197
ENSAPLT00000002754
194158287 - 194199253
40967