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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194177878_194181158_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194177878 - 194181158
Intron Length:
3281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATACGT
Flanking Amino Acid:
THKHNFSPSRRSASPSGQHH
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82
0.72
0.7
76.1
26
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
48.4
-0
2.1
73.45
43.3

Associated Gene:

Gene:
ZC3H13
Ensembl Gene ID:
ENSAPLG00000002707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033983
194157632 - 194199253
41622
ENSAPLT00000018663
194152057 - 194199253
47197
ENSAPLT00000002754
194158287 - 194199253
40967