About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194182926_194183799_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
194182926 - 194183799
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACAT
5'SS Class:
major
3'SS Sequence:
ACATCACTATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTCTATATCG
Flanking Amino Acid:
RGRGPELSDKGSRTRSSQVD
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
66.2
39.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
59.5
0.22
1
57
38
Minor 5ss
39.8
-1.1
3.1
56.6
47.5
Minor BPS
52.4
-0
2
63.83
44.3

Associated Gene:

Gene:
ZC3H13
Ensembl Gene ID:
ENSAPLG00000002707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018663
194152057 - 194199253
47197
ENSAPLT00000002754
194158287 - 194199253
40967
ENSAPLT00000033983
194157632 - 194199253
41622