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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194183980_194186188_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194183980 - 194186188
Intron Length:
2209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGTA
5'SS Class:
major
3'SS Sequence:
CTTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTCTCTTCACA
Flanking Amino Acid:
ERDRRDNRERDTRASSPVRH
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.3
0.77
0.7
79.3
26.3
Minor 5ss
42.4
-0.8
3.1
58.1
46.4
Minor BPS
60.8
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
ZC3H13
Ensembl Gene ID:
ENSAPLG00000002707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033983
194157632 - 194199253
41622
ENSAPLT00000018663
194152057 - 194199253
47197
ENSAPLT00000002754
194158287 - 194199253
40967