Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194186733_194187778_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194186733 - 194187778

Intron Length:

1046

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACAAAT

U12 Branch Point Sequence:

TTGACTACAAAT

Flanking Amino Acid:

SRDVHEERKSKKRHRNESSP

Intron Amino Acid Position:

874

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

0.9

71.3

34.5

Major BPS

69.5

0.48

73.5

28.6

Major PPT

80.5

0.69

0.9

36.8

Minor 5ss

28.3

-2.5

3.1

31.3

36.7

Minor BPS

46.5

-0.1

1.9

67.49

42.8

Associated Gene:

Gene:

ZC3H13

Ensembl Gene ID:

ENSAPLG00000002707

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033983

194157632 - 194199253

41622

ENSAPLT00000018663

194152057 - 194199253

47197

ENSAPLT00000002754

194158287 - 194199253

40967