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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194187883_194188219_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194187883 - 194188219
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCATTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCCCATTG
Flanking Amino Acid:
SDAYNSGDDKNEKHRLLSQV
Intron Amino Acid Position:
909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.1
0.43
0.9
64.7
36.1
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
45.8
-0.4
2.1
59.83
42.4

Associated Gene:

Gene:
ZC3H13
Ensembl Gene ID:
ENSAPLG00000002707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033983
194157632 - 194199253
41622
ENSAPLT00000018663
194152057 - 194199253
47197
ENSAPLT00000002754
194158287 - 194199253
40967