Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194190776_194193681_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194190776 - 194193681

Intron Length:

2906

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGATAT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTGTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAA

U12 Branch Point Sequence:

ATTGCTTTAAAG

Flanking Amino Acid:

NEAEKVESLEGGEDEAKIDD

Intron Amino Acid Position:

1417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.8

82.9

Major BPS

0.7

0.9

79.6

29.1

Major PPT

75.1

0.57

0.9

69.6

36.8

Minor 5ss

34.2

-1.8

3.2

46.6

48.7

Minor BPS

63.3

0.28

1.6

66.8

Associated Gene:

Gene:

ZC3H13

Ensembl Gene ID:

ENSAPLG00000002707

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033983

194157632 - 194199253

41622

ENSAPLT00000018663

194152057 - 194199253

47197

ENSAPLT00000002754

194158287 - 194199253

40967