About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194220225_194221090_F

Intron Information:

Intron Rank:
133015
Intron Class:
major
Intron Phase:
Intron Coordinates:
194220225 - 194221090
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCAG
5'SS Class:
strong_major
3'SS Sequence:
TATTGTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
CTTGCCATATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
68.8
43.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
81.6
0.71
0.8
78.2
36
Minor 5ss
39.1
-1.2
2.9
49.5
46.7
Minor BPS
48.6
-0.1
2
63.7
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021539
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026607
194219599 - 194221794
2196