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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194312098_194312553_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194312098 - 194312553
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TCTTTGTTACCA
Flanking Amino Acid:
MNDELTLPVAE
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
79.9
0.67
0.9
73.7
40.6
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
51.4
0.04
2.3
70.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027871
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017808
194311702 - 194332491
20790