About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194312724_194312821_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194312724 - 194312821
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAAAAGG
5'SS Class:
major
3'SS Sequence:
TTGCTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
ATTATATTAAGC
Flanking Amino Acid:
QIPALLSQWKIKEKSRKTST
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
61.8
42.8
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
81.8
0.72
0.8
73.7
36.9
Minor 5ss
34.7
-1.7
3.1
44.6
43.3
Minor BPS
51.3
0.02
1.9
66.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027871
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018904
194305281 - 194332491
27211
ENSAPLT00000017808
194311702 - 194332491
20790
ENSAPLT00000020226
194305281 - 194332491
27211