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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194327492_194327699_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194327492 - 194327699
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTGCACCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGCTCCTGACGG
Flanking Amino Acid:
ADLKEQPHEKLFCCRSYRKV
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.9
33.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
65.5
0.35
0.9
57.5
33
Minor 5ss
34.1
-1.8
3
41.4
39.1
Minor BPS
43.6
-0.6
2
45.56
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027871
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018904
194305281 - 194332491
27211
ENSAPLT00000017808
194311702 - 194332491
20790
ENSAPLT00000020226
194305281 - 194332491
27211