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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194329206_194330780_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194329206 - 194330780
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGTA
5'SS Class:
major
3'SS Sequence:
TTTGCTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TGCCTCTCACCA
Flanking Amino Acid:
DSDCVAEHLKLCQSPGPVRR
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.2
37.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
83.6
0.76
0.8
77.8
31
Minor 5ss
26
-2.8
3.7
36.6
47.9
Minor BPS
47.1
-0.2
1.8
57.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027871
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020226
194305281 - 194332491
27211
ENSAPLT00000018904
194305281 - 194332491
27211
ENSAPLT00000017808
194311702 - 194332491
20790