Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194331857_194332368_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194331857 - 194332368

Intron Length:

512

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGCT

5'SS Class:

strong_major

3'SS Sequence:

GCTCTCTTCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTGAC

U12 Branch Point Sequence:

GCATTGACACTC

Flanking Amino Acid:

IRFNVGARLKLKDPRTSHLL

Intron Amino Acid Position:

551

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.84

0.9

74.9

35.3

Major BPS

66.4

0.41

58.7

38.1

Major PPT

77.9

0.63

0.8

72.3

32.3

Minor 5ss

33.5

-1.9

3.4

47.6

Minor BPS

32.2

-1.3

2.1

36.19

34.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027871

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018904

194305281 - 194332491

27211

ENSAPLT00000017808

194311702 - 194332491

20790

ENSAPLT00000020226

194305281 - 194332491

27211