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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194344936_194345933_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194344936 - 194345933
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTATGCAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
AATGTTTTATTT
Flanking Amino Acid:
CLSKLYRCIDRAVFQGLSQE
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
66.8
40.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
89.3
0.88
0.6
85
22.7
Minor 5ss
46.2
-0.4
2.6
55.9
42.3
Minor BPS
50.4
0.09
1.6
66.33
39.3

Associated Gene:

Gene:
COG3
Ensembl Gene ID:
ENSAPLG00000010918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011380
194335396 - 194362431
27036