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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194346059_194347960_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194346059 - 194347960
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
TATTTCTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTCTAACT
Flanking Amino Acid:
DPESCSLVKSGSAESLNPRH
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
69.5
34.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.6
0.44
1
64.5
41.4
Minor 5ss
40
-1.1
2.8
48.8
41.7
Minor BPS
67.5
0.63
1.6
85.08
35

Associated Gene:

Gene:
COG3
Ensembl Gene ID:
ENSAPLG00000010918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011380
194335396 - 194362431
27036