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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194348067_194351346_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
194348067 - 194351346
Intron Length:
3280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCCGAT
5'SS Class:
weak_major
3'SS Sequence:
TCTTCCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATACATATAATT
Flanking Amino Acid:
AYPDKLEMMEQIAQSLKDEQ
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
64.9
41.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
86.2
0.81
0.7
81
24.1
Minor 5ss
49.6
-0
3
72.7
44.5
Minor BPS
48.4
-0
1.7
67.02
37.2

Associated Gene:

Gene:
COG3
Ensembl Gene ID:
ENSAPLG00000010918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011380
194335396 - 194362431
27036