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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194352918_194355058_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194352918 - 194355058
Intron Length:
2141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGTGCTTTATTT
Flanking Amino Acid:
EFFTKPTPKLDELLEKLCLS
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.1
60.8
44.4
Major BPS
69.6
0.49
1
59.5
39
Major PPT
87.6
0.85
0.6
85
22.5
Minor 5ss
34.3
-1.8
3.5
44.6
44.5
Minor BPS
59.8
0.39
1.7
76.04
41.4

Associated Gene:

Gene:
COG3
Ensembl Gene ID:
ENSAPLG00000010918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011380
194335396 - 194362431
27036