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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194355748_194355979_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194355748 - 194355979
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTGTTTGGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATTTCTCGATT
Flanking Amino Acid:
QVEQRSEKMPEYQQVLNEIH
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.6
40.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
67.6
0.4
1
61.7
44.5
Minor 5ss
35.2
-1.7
2.8
39
40.2
Minor BPS
59.1
0.37
1.5
73.9
36.9

Associated Gene:

Gene:
COG3
Ensembl Gene ID:
ENSAPLG00000010918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011380
194335396 - 194362431
27036