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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194356285_194357679_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194356285 - 194357679
Intron Length:
1395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
TGTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCCATTTTAACC
Flanking Amino Acid:
QNLTSQLMKRDPSSVPNSDN
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.7
46.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
87.1
0.84
0.7
84.9
30
Minor 5ss
28.2
-2.5
3.4
29.1
43.5
Minor BPS
63.9
0.42
1.3
65.81
40.5

Associated Gene:

Gene:
COG3
Ensembl Gene ID:
ENSAPLG00000010918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011380
194335396 - 194362431
27036