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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194358189_194358310_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194358189 - 194358310
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TGTTTTCCAAAG
Flanking Amino Acid:
YFNELENINTKLNSPTLSVN
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
87.5
28.9
Major BPS
65
0.37
1.3
75
40
Major PPT
72.8
0.51
1
74.8
33.9
Minor 5ss
39.8
-1.1
2.8
52.2
44.4
Minor BPS
44.9
-0.5
1.9
54.13
40.7

Associated Gene:

Gene:
COG3
Ensembl Gene ID:
ENSAPLG00000010918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011380
194335396 - 194362431
27036