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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194358386_194359908_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194358386 - 194359908
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
EACEQLLKEQSELADLAENI
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
87.9
0.85
0.8
85.2
28
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
COG3
Ensembl Gene ID:
ENSAPLG00000010918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011380
194335396 - 194362431
27036