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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194361381_194361902_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194361381 - 194361902
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
CACGCTATAAAA
Flanking Amino Acid:
ENERIETAQQFFSWFAQLQT
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
68.9
0.43
0.9
59.6
41.7
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
45.2
-0.3
1.8
50.13
41.1

Associated Gene:

Gene:
COG3
Ensembl Gene ID:
ENSAPLG00000010918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011380
194335396 - 194362431
27036