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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194372535_194372772_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194372535 - 194372772
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTATATTT
Flanking Amino Acid:
YKGTLDCLLQTWKNEGFFAL
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.1
0.83
0.8
85.3
34.4
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
50.7
0.1
1.8
73.26
38.1

Associated Gene:

Gene:
SLC25A30
Ensembl Gene ID:
ENSAPLG00000011120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011601
194372432 - 194379760
7329
ENSAPLT00000022489
194372432 - 194381059
8628