Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194372912_194373315_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194372912 - 194373315

Intron Length:

404

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTTTT

5'SS Class:

major

3'SS Sequence:

CTTCTTTTATTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

CCTTTATTAAAA

Flanking Amino Acid:

YMGDTVYTHFLSSFTCGLAG

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

81.2

33.5

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

80.4

0.68

0.8

81.6

28.7

Minor 5ss

-0.1

2.8

77.2

37.5

Minor BPS

55.7

0.18

1.7

65.08

41.3

Associated Gene:

Gene:

SLC25A30

Ensembl Gene ID:

ENSAPLG00000011120

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022489

194372432 - 194381059

8628

ENSAPLT00000011601

194372432 - 194379760

7329