About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194378053_194379727_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194378053 - 194379727
Intron Length:
1675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTACGTTTC
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTTCTTTCACA
Flanking Amino Acid:
HPTWIFWRGLKEESIMSALN
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
68.9
37
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.5
0.84
0.7
83
25.4
Minor 5ss
45.5
-0.5
3
62.5
37.4
Minor BPS
69.1
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
SLC25A30
Ensembl Gene ID:
ENSAPLG00000011120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011601
194372432 - 194379760
7329