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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194398067_194398789_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194398067 - 194398789
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTCTCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATGTTTTCAAAG
Flanking Amino Acid:
YKKYIKDYMKAIKARLEEHK
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.7
43.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.7
0.76
0.7
76.5
32.1
Minor 5ss
44.8
-0.6
2.8
53.8
43.6
Minor BPS
49.1
-0.2
1.7
54.65
40.7

Associated Gene:

Gene:
TPT1
Ensembl Gene ID:
ENSAPLG00000004672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023074
194397739 - 194400649
2911
ENSAPLT00000004815
194397739 - 194400649
2911
ENSAPLT00000023128
194397739 - 194573191
175453