About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194398896_194573068_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
194398896 - 194573068
Intron Length:
174173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
CTGGAAGTGCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCCGAT
U12 Branch Point Sequence:
TCTGCTGGAAGT
Flanking Amino Acid:
HILANFKNYQFSLQVTAMTA
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
67.8
39.3
Major BPS
48.9
-0
1.3
46.1
38.7
Major PPT
52.5
0.06
1.2
42.9
46.4
Minor 5ss
36.8
-1.5
3.1
47.7
47.7
Minor BPS
42.9
-0.4
2.3
63.65
47

Associated Gene:

Gene:
TPT1
Ensembl Gene ID:
ENSAPLG00000004672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023128
194397739 - 194573191
175453