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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194404256_194409942_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194404256 - 194409942
Intron Length:
5687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTACC
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCATAACT
Flanking Amino Acid:
DLVDITKQPVIYLKEILREI
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.7
38.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
36.1
-1.6
2.9
43.4
37.9
Minor BPS
72.7
0.79
1.6
88.54
36.3

Associated Gene:

Gene:
GTF2F2
Ensembl Gene ID:
ENSAPLG00000004535
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004676
194403874 - 194485651
81778