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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194410087_194417524_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194410087 - 194417524
Intron Length:
7438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATCTAATTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATGTCTTTAAAA
Flanking Amino Acid:
YKPVANHQYNIEYEKKKKED
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
63.2
0.3
1
59.1
41.2
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
71.4
0.67
1.3
74.95
36.4

Associated Gene:

Gene:
GTF2F2
Ensembl Gene ID:
ENSAPLG00000004535
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004676
194403874 - 194485651
81778